P9.event_collapsed

Event-collapsed counting

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Label

CytoMut event-collapsed imbalance counting

Basis

CytoMut custom policy built on Table 7 weights plus biological-equivalence collapse rules

Scope

Whole sample

Clone handling

Repeated abnormalities across clones are deduplicated at the sample level.

Weighting

Unsigned replacement derivatives keep their Table 7 weight while compensatory whole-chromosome gains are not counted separately.

When to use

Use when equivalent encodings such as +1,der(1;7) and +der(1;7),-7 should yield the same total.

Summary

Starts from ISCN Table 7 sample-level weighting, then absorbs compensatory whole-chromosome gains into accompanying unsigned replacement derivatives.

Source Documents

  • paper/abnormality_counting_methods_and_policies.md